What is circular RNA?

Sept. 26, 2023

Recently, researchers from the Indian Institute of Science Education and Research Bhopal (IISER Bhopal) identified a specific circular RNA (circRNA) called ‘ciTRAN’, which plays a crucial role in the multiplication of the AIDS-causing HIV-1 virus within the human body.

About circular RNA:

  • Ribonucleic acid is a molecule in living cells that carries genetic information and helps in the production of proteins.
  • RNAs are in general straight-chain, free-end structures but these circular RNA (‘circRNA’ ) forms a closed-loop.
  • The circRNA plays a pivotal role in regulating gene expression and is essential for various biological processes.
  • Its role in HIV-1 replication has remained unclear for a long time.
  • Characterizing circular RNA can be tricky because it usually is less abundant, making it further challenging to detect in the native form.
  • During viral infections, there's so much information from the virus that it can make it hard to find the less common ones like circular RNA.

Highlights about the recent findings

  • The researchers developed a novel approach called ‘circDR-Seq’, to successfully capture circRNAs from T-cells (white blood cells) infected with the HIV-1 virus and identified a specific circRNA named ciTRAN, which plays an important role in the multiplication of the virus.
  • HIV-1 viral protein R (VpR) is a multifunctional protein that plays specific roles at multiple stages of the HIV-1 viral life cycle and affects anti-HIV functions of the immune cells.
  • Further found that HIV-1 infection induces ciTRAN expression in a Vpr-dependent manner and that ciTRAN interacts with serine/arginine-rich splicing factor 1 (SRSF1), a protein known to repress HIV-1 transcription,”
  • How does this work?
    • The results suggest that HIV-1 hijacks ciTRAN which is generally altered during immunological signaling, inflammation, and viral infection.
    • It further prevents (SRSF1) from doing its job, thereby promoting efficient viral transcription. 
    • In addition, researchers demonstrated that an SRSF1-inspired mimic can inhibit viral transcription regardless of ciTRAN induction.
    • The hijacking of a host circRNA thus represents a previously unknown facet of primate lentiviruses in overcoming transmission bottlenecks,

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